SNP Profiles of MO 9   View Data

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 1234567891011121314
_Input profile
ACCTACGGAGCTCTCTCTAGCTCTCTAT
1._GC-05-119-3-21
ACCTACGGAGCTCTCTCTAGCTCTCTAT
2._GC-05-071-2-22
ACCTACGGAGCTCTCTCTAGCTCTCTAT
3._GC-05-071-2-22
ACCTACGGAGCTCTCTCTAGCTCTCTAT
4._GC-05-071-2-22
ACCTACGGAGCTCTCTCTAGCTCTCTAT
5._MO_9
ACCTAC____CTCTAG_CT__
6._MO_9
ACCTAC____CTCTAG_CT__
7._MO_9
ACCTAC____CTCTAG_CT__
8._MO_9
ACCTAC____CTCTAG_CT__
9._MO_9
ACCTAC____CTCTAG_CT__
10._GC-05-119-3-21
ACCTCCGGGGCCCCCCCCGGTTCCTTAA
11._GC-05-071-2-22
ACCTCCGGGGCCCCCCCCGGTTCCTTAA
12._GC-05-119-3-21
ACCTCCGGGGCCCCCCCCGGTTCCTTAA
13._GC-05-119-3-21
ACCTCCGGGGCCCCCCCCGGTTCCTTAA
14._GC-05-071-2-22
ACCTCCGGGGCCCCCCCCGGTTCCTTAA
15._MO_9
ACCTCC____CCCCGG_CC__
16._MO_9
ACCTCC____CCCCGG_CC__
17._MO_9
ACCTCC____CCCCGG_CC__
18._MO_9
ACCTCC____CCCCGG_CC__
19._MO_9
ACCTCC____CCCCGG_CC__
20._MO_9
ACCTCC____CCCCGG_CC__
21._RUQ_1691
__CC__CT________
22._RUQ_1691
AC_CCGGGG_GGGG_GGAAGGAATT
 1516171819202122232425262728
_Input profile
ACAAAGCGCCCGCTAATTGGATATGGCC
1._GC-05-119-3-21
ACAAAGCGCCCGCTAATTGGATATGGCC
2._GC-05-071-2-22
ACAAAGCGCCCGCTAATTGGATATGGCC
3._GC-05-071-2-22
ACAAAGCGCCCGCTAATTGGATATGGCC
4._GC-05-071-2-22
ACAAAGCGCCCGCTAATTGGATATGGCC
5._MO_9
__AG__CG____ATAT_CC
6._MO_9
__AG__CG____ATAT_CC
7._MO_9
__AG__CG____ATAT_CC
8._MO_9
__AG__CG____ATAT_CC
9._MO_9
__AG__CG____ATAT_CC
10._GC-05-119-3-21
CCAAGGGGCCCGTTAATTGGAAAACCGG
11._GC-05-071-2-22
CCAAGGGGCCCGTTAATTGGAAAACCGG
12._GC-05-119-3-21
CCAAGGGGCCCGTTAATTGGAAAACCGG
13._GC-05-119-3-21
CCAAGGGGCCCGTTAATTGGAAAACCGG
14._GC-05-071-2-22
CCAAGGGGCCCGTTAATTGGAAAACCGG
15._MO_9
__GG__CG____AAAA_GG
16._MO_9
__GG__CG____AAAA_GG
17._MO_9
__GG__CG____AAAA_GG
18._MO_9
__GG__CG____AAAA_GG
19._MO_9
__GG__CG____AAAA_GG
20._MO_9
__GG__CG____AAAA_GG
21._RUQ_1691
__GGTT_________GG
22._RUQ_1691
CCAGGGCC_CGAAAAAAGGAAAAGGCC
 2930313233343536373839404142
_Input profile
ATTTGTAGCGACAGGGGTGTAACCAGCC
1._GC-05-119-3-21
ATTTGTAGCGACAGGGGTGTAACCAGCC
2._GC-05-071-2-22
ATTTGTAGCGACAGGGGTGTAACCAGCC
3._GC-05-071-2-22
ATTTGTAGCGACAGGGGTGTAACCAGCC
4._GC-05-071-2-22
ATTTGTAGCGACAGGGGTGTAACCAGCC
5._MO_9
AT___CG_AGGG__AA___
6._MO_9
AT___CG_AGGG__AA___
7._MO_9
AT___CG_AGGG__AA___
8._MO_9
AT___CG_AGGG__AA___
9._MO_9
AT___CG_AGGG__AA___
10._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
11._GC-05-071-2-22
AATTTTAGGGCCAGGTGGGTGGTTGGCC
12._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
13._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
14._GC-05-071-2-22
AATTTTAGGGCCAGGTGGGTGGTTGGCC
15._MO_9
AA___GG_AGGT__GG___
16._MO_9
AA___GG_AGGT__GG___
17._MO_9
AA___GG_AGGT__GG___
18._MO_9
AA___GG_AGGT__GG___
19._MO_9
AA___GG_AGGT__GG___
20._MO_9
AA___GG_AGGT__GG___
21._RUQ_1691
____GG_AG____TT__
22._RUQ_1691
AAAAAAAGGGCCAGACCCACGGAAGGGG
 4344454647484950515253545556
_Input profile
GGATCCAGAAAACTACAGAGGGCTCTTT
1._GC-05-119-3-21
GGATCCAGAAAACTACAGAGGGCTCTTT
2._GC-05-071-2-22
GGATCCAGAAAACTACAGAGGGCTCTTT
3._GC-05-071-2-22
GGATCCAGAAAACTACAGAGGGCTCTTT
4._GC-05-071-2-22
GGATCCAGAAAACTACAGAGGGCTCTTT
5._MO_9
__CC________CTCT_
6._MO_9
__CC________CTCT_
7._MO_9
__CC________CTCT_
8._MO_9
__CC________CTCT_
9._MO_9
__CC________CTCT_
10._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
11._GC-05-071-2-22
GGTTCCAAGGAACCCCGGAGGGCCCCTT
12._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
13._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
14._GC-05-071-2-22
GGTTCCAAGGAACCCCGGAGGGCCCCTT
15._MO_9
__CC________CCCC_
16._MO_9
__CC________CCCC_
17._MO_9
__CC________CCCC_
18._MO_9
__CC________CCCC_
19._MO_9
__CC________CCCC_
20._MO_9
__CC________CCCC_
21._RUQ_1691
____GG_________
22._RUQ_1691
CC_GG_GGAAGG_GGAGCCGGGGAA
 5758596061626364656667686970
_Input profile
AGCGCTTTACCGAGAAAGGTGTAGCTCC
1._GC-05-119-3-21
AGCGCTTTACCGAGAAAGGTGTAGCTCC
2._GC-05-071-2-22
AGCGCTTTACCGAGAAAGGTGTAGCTCC
3._GC-05-071-2-22
AGCGCTTTACCGAGAAAGGTGTAGCTCC
4._GC-05-071-2-22
AGCGCTTTACCGAGAAAGGTGTAGCTCC
5._MO_9
_CG_TTACCG_AAAGGTGT___
6._MO_9
_CG_TTACCG_AAAGGTGT___
7._MO_9
_CG_TTACCG_AAAGGTGT___
8._MO_9
_CG_TTACCG_AAAGGTGT___
9._MO_9
_CG_TTACCG_AAAGGTGT___
10._GC-05-119-3-21
GGCCCTCT_GGGGACAAGTGGAGCTCC
11._GC-05-071-2-22
_CCCTCTAAGGGGACAAGTGGAGCTCC
12._GC-05-119-3-21
GGCCCTCTAAGGGGACAAGTGGAGCTCC
13._GC-05-119-3-21
GGCCCTCTAAGGGGACAAGTGGAGCTCC
14._GC-05-071-2-22
GGCCCTCTAAGGGGACAAGTGGAGCTCC
15._MO_9
___CTACGG_ACAAGTGG___
16._MO_9
_CC_CT_GG_ACAAGTGG___
17._MO_9
_CC_CTAAGG_ACAAGTGG___
18._MO_9
_CC_CTAAGG_ACAAGTGG___
19._MO_9
_CC_CTAAGG_ACAAGTGG___
20._MO_9
_CC_CTAAGG_ACAAGTGG___
21._RUQ_1691
GG______ACAA_GGAG__
22._RUQ_1691
GGGGAGAGACGGGGACAAACCCAG__
 7172737475767778798081828384
_Input profile
AACTACGGCCACAAACCGCTAAACTTCT
1._GC-05-119-3-21
AACTACGGCCACAAACCGCTAAACTTCT
2._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
3._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
4._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
5._MO_9
AACT_____ACCG___TTCT
6._MO_9
AACT_____ACCG___TTCT
7._MO_9
AACT_____ACCG___TTCT
8._MO_9
AACT_____ACCG___TTCT
9._MO_9
AACT_____ACCG___TTCT
10._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
11._GC-05-071-2-22
AACTCCAGCCACGGCCCGCCTTAATTCT
12._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
13._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
14._GC-05-071-2-22
AACTCCAGCCACGGCCCGCCTTAATTCT
15._MO_9
AACT_____CCCG___TTCT
16._MO_9
AACT_____CCCG___TTCT
17._MO_9
AACT_____CCCG___TTCT
18._MO_9
AACT_____CCCG___TTCT
19._MO_9
AACT_____CCCG___TTCT
20._MO_9
AACT_____CCCG___TTCT
21._RUQ_1691
AA______CCCG__AA__
22._RUQ_1691
_AGCCAGCCAC_CCCGGGTTAAAAAG
 858687888990919293     
_Input profile
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
1._GC-05-119-3-21
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
2._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
3._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
4._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
5._MO_9
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
6._MO_9
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
7._MO_9
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
8._MO_9
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
9._MO_9
CT_AG_CTGTCT__X_XX_XX_XX_XX_X
10._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
11._GC-05-071-2-22
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-05-071-2-22
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
15._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
16._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
17._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
18._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
19._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
20._MO_9
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
21._RUQ_1691
CC__CT_TT___X_XX_XX_XX_XX_X
22._RUQ_1691
_GG__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: MO_9 GC-05-071-2-22

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

1._MO_9 GC-05-119-3-21

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._MO_9 GC-05-071-2-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

3._MO_9 GC-05-071-2-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._MO_9 GC-05-071-2-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

8._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

9._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

10._MO_9 GC-05-119-3-21

64.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

11._MO_9 GC-05-071-2-22

64.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._MO_9 GC-05-119-3-21

64 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

13._MO_9 GC-05-119-3-21

64 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._MO_9 GC-05-071-2-22

64 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._MO_9

63.2 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

16._MO_9

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

17._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

19._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

20._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

21._MO_9 RUQ_1691

52.4 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._MO_9 RUQ_1691

38 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1350 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240